Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs74450753 | chr19:46317709 | G/C | 6.71E-8 | 499 | 38.05 | 29.13 | 1.77 | KM Plot |
KIRC | rs74463506 | chr9:92167627 | C/T | 1.52E-5 | 504 | 36.88 | 48.78 | 10.62 | KM Plot |
KIRC | rs74665341 | chr2:67606963 | A/G | 2.21E-7 | 506 | 37.33 | 37.77 | 2.03 | KM Plot |
KIRC | rs74671132 | chr21:47963485 | T/C | 1.44E-5 | 502 | 37.47 | 37.43 | 6.87 | KM Plot |
KIRC | rs74740277 | chr2:109414555 | A/G | 2.91E-12 | 505 | 37.75 | 25.78 | 2.3 | KM Plot |
KIRC | rs74753391 | chr20:45075171 | C/T | 1.0E-13 | 506 | 37.75 | 29.13 | 2.17 | KM Plot |
KIRC | rs7478265 | chr10:33042969 | A/T | 3.33E-6 | 506 | 37.37 | 37.63 | 7.33 | KM Plot |
KIRC | rs74804516 | chr1:6393250 | G/A | 6.18E-11 | 505 | 37.18 | 46.95 | 2.3 | KM Plot |
KIRC | rs74813762 | chr2:109502537 | T/C | 9.61E-12 | 508 | 37.73 | 26.43 | 2.3 | KM Plot |
KIRC | rs74827820 | chr11:34770370 | A/T | 8.56E-8 | 506 | 37.77 | 25.53 | 3.3 | KM Plot |
KIRC | rs7483005 | chr11:34857332 | C/T | 9.38E-8 | 504 | 37.53 | 31.87 | 3.3 | KM Plot |
KIRC | rs74983286 | chr20:37236195 | T/C | 2.86E-5 | 502 | 37.7 | 31.53 | 4.63 | KM Plot |
KIRC | rs75055114 | chr5:58987983 | C/T | 0 | 499 | 37.03 | 39.53 | 0.07 | KM Plot |
KIRC | rs75108204 | chr2:109431972 | G/C | 5.29E-8 | 504 | 37.77 | 26.27 | 2.03 | KM Plot |
KIRC | rs75155869 | chr2:109512115 | C/A | 5.64E-12 | 509 | 37.73 | 26.3 | 2.3 | KM Plot |